MLOC_67112 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains176.336153.122153.993192.102
LEAShoots from the seedlings (10 cm shoot stage)132.01145.895129.451139.044
INF1Young developing inflorescences (5mm)311.311328.867336.714321.291
INF2Developing inflorescences (1-1.5 cm)318.782332.964337.703415.617
ROORoots from the seedlings (10 cm shoot stage)156.457182.268204.137281.718
NODDeveloping tillers at six leaf stage, 3rd internode116.019106.976138.866439.465
CAR5Developing grain, bracts removed (5 DPA)185.57213.556188.156228.884
CAR15Developing grain, bracts removed (15 DPA)63.837863.902357.2569164.801



CDS Structure of MLOC_67112






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_67112.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251621.1NoneNoneNoneNone
MLOC_67112.1CUST_5444_PI427708080AvailableAvailablecontig_52591 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g38960.1 +1 4e-62 196 127/141 (90%) 13103.m04230 protein DNA-directed RNA polymerase subunit, putative, expressed
TAIR PP10 AT2G04630.1 +1 1e-54 176 110/144 (76%) | Symbols: NRPB6B, NRPE6B | RNA polymerase Rpb6 | chr2:1619168-1620246 REVERSE LENGTH=144