MLOC_66914 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.597433.429892.792083.22533
LEAShoots from the seedlings (10 cm shoot stage)2.372533.115873.380462.41933
INF1Young developing inflorescences (5mm)4.535144.550133.055093.5929
INF2Developing inflorescences (1-1.5 cm)3.766555.432674.562265.2709
ROORoots from the seedlings (10 cm shoot stage)1.552712.622571.157472.65582
NODDeveloping tillers at six leaf stage, 3rd internode0.7276580.8167650.6737822.24609
CAR5Developing grain, bracts removed (5 DPA)7.301697.494535.859466.9143
CAR15Developing grain, bracts removed (15 DPA)0.5176120.5799140.5479411.33432



CDS Structure of MLOC_66914






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66914.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_66914.1CUST_15041_PI427708080AvailableAvailablecontig_52278 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53500.1 +3 3e-124 380 196/233 (84%) 13103.m05840 protein helicase conserved C-terminal domain containing protein, expressed
TAIR PP10 AT4G14790.1 +3 2e-85 278 144/216 (67%) | Symbols: ATSUV3, EDA15 | ATP-dependent RNA helicase, mitochondrial (SUV3) | chr4:8496351-8499829 REVERSE LENGTH=571