MLOC_66696 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.08102460.4879530.4404990.373459
LEAShoots from the seedlings (10 cm shoot stage)0.8465590.4180610.3437550.482472
INF1Young developing inflorescences (5mm)1.074910.8768241.010160.859515
INF2Developing inflorescences (1-1.5 cm)1.45181.125121.112081.38917
ROORoots from the seedlings (10 cm shoot stage)00.07988160.2421130.104725
NODDeveloping tillers at six leaf stage, 3rd internode0.1879080.1824440.4026830.802347
CAR5Developing grain, bracts removed (5 DPA)1.25521.214671.041261.18277
CAR15Developing grain, bracts removed (15 DPA)0.3356420.2353560.4374350.75509



CDS Structure of MLOC_66696






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66696.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_66696.1CUST_8972_PI427708083AvailableAvailablecontig_51973 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g32740.1 -2 1e-46 113 69/166 (42%) 13105.m03375 protein transposon protein, putative, Pong sub-class
TAIR PP10 AT2G13770.1 -2 5e-14 73 36/63 (57%) CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343