MLOC_66683 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.024221.114151.040081.21128
LEAShoots from the seedlings (10 cm shoot stage)0.7214520.7739940.2652060.51831
INF1Young developing inflorescences (5mm)2.378912.689062.211922.40286
INF2Developing inflorescences (1-1.5 cm)2.3233.139312.592463.50741
ROORoots from the seedlings (10 cm shoot stage)0.9886290.9257461.179691.29986
NODDeveloping tillers at six leaf stage, 3rd internode0.1428370.1771720.3365670.742916
CAR5Developing grain, bracts removed (5 DPA)1.229021.50251.327071.58691
CAR15Developing grain, bracts removed (15 DPA)0.385760.3951760.4153911.07716



CDS Structure of MLOC_66683






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66683.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369927NoneNoneNoneNone
MLOC_66683.1CUST_5387_PI427708080AvailableAvailablecontig_51958 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g24240.1 +2 0.0 724 364/483 (75%) 13109.m02300 protein pentatricopeptide, putative, expressed
TAIR PP10 AT4G02750.1 +2 3e-103 340 183/447 (41%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781