MLOC_66652 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.3313.286614.579312.9359
LEAShoots from the seedlings (10 cm shoot stage)16.179712.738119.290813.5516
INF1Young developing inflorescences (5mm)24.828425.782426.559519.472
INF2Developing inflorescences (1-1.5 cm)23.387628.174127.68926.1635
ROORoots from the seedlings (10 cm shoot stage)8.1592913.359913.021314.1564
NODDeveloping tillers at six leaf stage, 3rd internode10.512916.58716.46254.6494
CAR5Developing grain, bracts removed (5 DPA)19.672721.776419.030117.2306
CAR15Developing grain, bracts removed (15 DPA)4.585134.312315.042599.14104



CDS Structure of MLOC_66652






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66652.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_66652.1CUST_15004_PI427708080AvailableAvailablecontig_51908 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g49940.1 +3 2e-37 145 91/115 (79%) 13101.m05198 protein ESP4, putative, expressed
TAIR PP10 AT1G27595.1 +3 3e-18 86 52/112 (46%) CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961