- Predicted Gene MLOC_66652
MLOC_66652 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 14.33 | 13.2866 | 14.5793 | 12.9359 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 16.1797 | 12.7381 | 19.2908 | 13.5516 |
| INF1 | Young developing inflorescences (5mm) | 24.8284 | 25.7824 | 26.5595 | 19.472 |
| INF2 | Developing inflorescences (1-1.5 cm) | 23.3876 | 28.1741 | 27.689 | 26.1635 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 8.15929 | 13.3599 | 13.0213 | 14.1564 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 10.5129 | 16.587 | 16.462 | 54.6494 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 19.6727 | 21.7764 | 19.0301 | 17.2306 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 4.58513 | 4.31231 | 5.04259 | 9.14104 |
CDS Structure of MLOC_66652
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_66652.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os01g49940.1 |
+3 |
2e-37 |
145 |
91/115 (79%) |
13101.m05198 protein ESP4, putative, expressed |
| TAIR PP10 |
AT1G27595.1 |
+3 |
3e-18 |
86 |
52/112 (46%) |
CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961 |