MLOC_66580 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.02293640.3175110.1154440.159738
INF2Developing inflorescences (1-1.5 cm)0.073866900.2361110.155846
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.0299194000.0273771
CAR15Developing grain, bracts removed (15 DPA)3.331024.515653.11769.99616



CDS Structure of MLOC_66580






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66580.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_66580.1CUST_14994_PI427708080AvailableAvailablecontig_51784 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g45110.1 +2 5e-59 199 127/214 (59%) 13108.m04918 protein AP2 domain containing protein, expressed
TAIR PP10 AT1G75490.1 +2 9e-27 108 50/73 (68%) Integrase-type DNA-binding superfamily protein | chr1:28336045-28336665 FORWARD LENGTH=206