- Predicted Gene MLOC_66548
- Gene IDMLOC_66548
- Source Contig contig_51741
MLOC_66548 FPKM values
FPKM by Treatment | FPKM by Replicate |
---|---|
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|---|---|---|---|---|
EMB | 4-day embryos dissected from germinating grains | 35.6644 | 29.6672 | 29.965 | 26.3992 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 30.3962 | 28.5442 | 33.47 | 22.6227 |
INF1 | Young developing inflorescences (5mm) | 51.9004 | 61.7987 | 65.3291 | 40.0351 |
INF2 | Developing inflorescences (1-1.5 cm) | 53.8005 | 61.231 | 54.8697 | 51.4167 |
ROO | Roots from the seedlings (10 cm shoot stage) | 22.447 | 33.6754 | 26.2442 | 30.0067 |
NOD | Developing tillers at six leaf stage, 3rd internode | 24.1993 | 31.8353 | 34.977 | 94.7054 |
CAR5 | Developing grain, bracts removed (5 DPA) | 36.4242 | 36.6935 | 39.0906 | 28.2285 |
CAR15 | Developing grain, bracts removed (15 DPA) | 22.9812 | 22.7181 | 25.9519 | 42.6675 |
CDS Structure of MLOC_66548
![](/morexGenes/blast_net_images/MLOC_66548_assembly3_WGSMorex_rbca.fasta_genes.png)
Members of Gene Cluster
This cluster has a confidence assignment of High Confidence.The gene has a transcript that is part of a cluster represented by AK251104.1
Cluster member | Probe ID | FPKM by replicate | FPKM by treatment | Source Contig |
---|---|---|---|---|
AK251104.1 | CUST_18949_PI427708080 | None | None | None |
MLOC_17797.1 | None | Available | None | contig_1578086 (Mapped) |
MLOC_27332.1 | None | Available | None | contig_1823075 (Mapped) |
MLOC_29898.1 | None | Available | None | contig_204773 (Mapped) |
MLOC_30057.1 | None | Available | None | contig_2060671 (Mapped) |
MLOC_32270.1 | None | Available | None | contig_227033 (Not mapped) |
MLOC_32287.1 | None | Available | None | contig_227167 (Mapped) |
MLOC_35059.1 | None | Available | None | contig_2454544 (Mapped) |
MLOC_41307.1 | None | Available | None | contig_2582023 (Not mapped) |
MLOC_48366.1 | None | Available | None | contig_322239 (Not mapped) |
MLOC_52104.1 | None | Available | None | contig_372875 (Not mapped) |
MLOC_52810.1 | None | Available | None | contig_378121 (Mapped) |
MLOC_66548.1 | None | Available | Available | contig_51741 (Mapped) |
MLOC_76557.1 | None | Available | None | contig_718451 (Not mapped) |
MLOC_78514.1 | None | Available | None | contig_806502 (Not mapped) |
MLOC_78671.1 | None | Available | None | contig_813667 (Not mapped) |
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP6 | None | - | - | - | - | - |
TAIR PP10 | None | - | - | - | - | - |