MLOC_66541 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.68929.4180212.637613.6882
LEAShoots from the seedlings (10 cm shoot stage)284.63620.215717.996892.2245
INF1Young developing inflorescences (5mm)6.933069.393378.25968.20729
INF2Developing inflorescences (1-1.5 cm)22.505816.472626.818226.6041
ROORoots from the seedlings (10 cm shoot stage)549.226127.317131.529237.987
NODDeveloping tillers at six leaf stage, 3rd internode26.953732.051728.4553113.863
CAR5Developing grain, bracts removed (5 DPA)11.599811.82926.5010312.3665
CAR15Developing grain, bracts removed (15 DPA)35.337238.651128.728198.649



CDS Structure of MLOC_66541






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66541.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368988NoneNoneNoneNone
MLOC_66541.2CUST_5361_PI427708080AvailableAvailablecontig_51731 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g15960.1 -3 4e-69 219 135/161 (84%) 13103.m01885 protein hsp20/alpha crystallin family protein, putative, expressed
TAIR PP10 AT3G46230.1 -3 7e-56 183 107/167 (64%) | Symbols: ATHSP17.4, HSP17.4 | heat shock protein 17.4 | chr3:16984263-16984733 REVERSE LENGTH=156