MLOC_66486 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains46.111141.318144.233748.7531
LEAShoots from the seedlings (10 cm shoot stage)42.358346.735651.685743.5903
INF1Young developing inflorescences (5mm)27.152632.197435.200828.9498
INF2Developing inflorescences (1-1.5 cm)31.119334.374334.591739.9868
ROORoots from the seedlings (10 cm shoot stage)64.50859.239452.643582.2959
NODDeveloping tillers at six leaf stage, 3rd internode65.35557.083468.9782205.667
CAR5Developing grain, bracts removed (5 DPA)50.643552.301949.229956.113
CAR15Developing grain, bracts removed (15 DPA)35.772634.871631.597288.7703



CDS Structure of MLOC_66486






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66486.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252967.1NoneNoneNoneNone
MLOC_66486.1CUST_5348_PI427708080AvailableAvailablecontig_51626 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g10290.2 +1 0.0 542 280/315 (89%) 13101.m14996 protein autophagy-related protein 3, putative, expressed
TAIR PP10 AT5G61500.1 +1 1e-152 441 225/319 (71%) | Symbols: ATATG3, ATG3 | autophagy 3 (APG3) | chr5:24734216-24736711 REVERSE LENGTH=313