MLOC_6647 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.769452.237712.449522.02852
LEAShoots from the seedlings (10 cm shoot stage)1.188030.2572370.6807460.519211
INF1Young developing inflorescences (5mm)0.3039631.573590.5123860.625655
INF2Developing inflorescences (1-1.5 cm)0.4401380.4302380.1576720.375003
ROORoots from the seedlings (10 cm shoot stage)8.430354.377425.714094.55948
NODDeveloping tillers at six leaf stage, 3rd internode5.148116.9639810.211117.042
CAR5Developing grain, bracts removed (5 DPA)4.366225.702464.472894.27065
CAR15Developing grain, bracts removed (15 DPA)0.2293850.103170.2457550.452272



CDS Structure of MLOC_6647






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_6647.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_6647.2CUST_14976_PI427708080AvailableAvailablecontig_137851 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g61310.1 -2 6e-76 241 128/134 (96%) 13101.m06523 protein DUF640 domain containing protein, putative
TAIR PP10 AT1G07090.1 -2 8e-69 221 111/132 (84%) | Symbols: LSH6 | Protein of unknown function (DUF640) | chr1:2174202-2174792 REVERSE LENGTH=196