MLOC_66454 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.439883.092582.689153.46149
LEAShoots from the seedlings (10 cm shoot stage)4.309221.935071.963942.2588
INF1Young developing inflorescences (5mm)10.190915.961914.906512.5597
INF2Developing inflorescences (1-1.5 cm)29.961818.40424.785227.6516
ROORoots from the seedlings (10 cm shoot stage)15.78169.3209215.314812.4762
NODDeveloping tillers at six leaf stage, 3rd internode4.493715.181955.2161414.847
CAR5Developing grain, bracts removed (5 DPA)9.259268.850468.835439.2278
CAR15Developing grain, bracts removed (15 DPA)2.948212.660362.957087.2904



CDS Structure of MLOC_66454






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66454.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355008NoneNoneNoneNone
MLOC_66454.1CUST_5342_PI427708080AvailableAvailablecontig_51577 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g20020.1 +1 0.0 728 381/459 (83%) 13105.m02118 protein polygalacturonase, putative, expressed
TAIR PP10 AT1G48100.1 +1 0.0 548 270/396 (68%) Pectin lyase-like superfamily protein | chr1:17766921-17769625 FORWARD LENGTH=475