MLOC_66427 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.603393.379212.56153.13593
LEAShoots from the seedlings (10 cm shoot stage)000.04373480.0423021
INF1Young developing inflorescences (5mm)0.1023440.2152960.03238190.112476
INF2Developing inflorescences (1-1.5 cm)0.07038270.04350670.03107570.0584807
ROORoots from the seedlings (10 cm shoot stage)0.1073770.089182400.182516
NODDeveloping tillers at six leaf stage, 3rd internode00.0039078300.036655
CAR5Developing grain, bracts removed (5 DPA)0.2781790.1795970.08976770.184562
CAR15Developing grain, bracts removed (15 DPA)50.973240.235442.4555106.578



CDS Structure of MLOC_66427






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66427.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372829NoneNoneNoneNone
MLOC_66427.2CUST_5337_PI427708080AvailableAvailablecontig_51539 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g26380.1 +2 0.0 755 375/489 (77%) 13109.m02535 protein aminotransferase, classes I and II, domain containing protein, expressed
TAIR PP10 AT1G17290.1 +2 0.0 600 296/484 (61%) | Symbols: AlaAT1 | alanine aminotransferas | chr1:5922771-5926093 FORWARD LENGTH=543