MLOC_66425 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.6854417.89614.830415.2692
LEAShoots from the seedlings (10 cm shoot stage)18.964219.383912.601513.7235
INF1Young developing inflorescences (5mm)26.828626.91523.079722.957
INF2Developing inflorescences (1-1.5 cm)35.13236.98237.672841.3579
ROORoots from the seedlings (10 cm shoot stage)10.638517.245914.006917.9757
NODDeveloping tillers at six leaf stage, 3rd internode13.09769.9555910.519525.9392
CAR5Developing grain, bracts removed (5 DPA)29.598523.411725.920726.3778
CAR15Developing grain, bracts removed (15 DPA)13.940213.026213.295233.2934



CDS Structure of MLOC_66425






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66425.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_66425.1CUST_12990_PI427708083AvailableAvailablecontig_51539 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g26390.3 +3 4e-85 284 146/168 (87%) 13109.m02537 protein AT-rich interaction region, putative, expressed
TAIR PP10 AT3G43240.1 +3 3e-35 142 78/164 (48%) ARID/BRIGHT DNA-binding domain-containing protein | chr3:15210032-15214440 REVERSE LENGTH=747