MLOC_66415 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains355.907298.324317.307393.515
LEAShoots from the seedlings (10 cm shoot stage)284.142341.571209.392278.842
INF1Young developing inflorescences (5mm)41.349443.509633.756140.563
INF2Developing inflorescences (1-1.5 cm)37.211744.37657.878861.0536
ROORoots from the seedlings (10 cm shoot stage)341.331221.012242.535366.604
NODDeveloping tillers at six leaf stage, 3rd internode193.676251.94300.391051.52
CAR5Developing grain, bracts removed (5 DPA)120.699112.645114.072140.783
CAR15Developing grain, bracts removed (15 DPA)19.598218.628626.680758.7564



CDS Structure of MLOC_66415






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66415.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251927.1NoneNoneNoneNone
MLOC_66415.3CUST_5334_PI427708080AvailableAvailablecontig_51529 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g47540.2 -1 0.0 834 398/447 (89%) 13105.m05039 protein CPuORF26 - conserved peptide uORF-containing transcript, expressed
TAIR PP10 AT1G48600.1 -1 0.0 745 351/447 (79%) | Symbols: PMEAMT, AtPMEAMT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:17966448-17969077 FORWARD LENGTH=475