MLOC_66396 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.526921.877251.8272.02651
LEAShoots from the seedlings (10 cm shoot stage)2.358893.021392.754762.48938
INF1Young developing inflorescences (5mm)2.447322.510622.795862.28372
INF2Developing inflorescences (1-1.5 cm)4.237433.826174.514974.70147
ROORoots from the seedlings (10 cm shoot stage)2.113882.669512.965143.49245
NODDeveloping tillers at six leaf stage, 3rd internode1.614882.049922.306787.02716
CAR5Developing grain, bracts removed (5 DPA)3.129222.889742.680212.96231
CAR15Developing grain, bracts removed (15 DPA)2.418521.837631.688154.93346



CDS Structure of MLOC_66396






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66396.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_66396.2CUST_14966_PI427708080AvailableAvailablecontig_51502 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g23530.1 +1 0.0 1579 834/1079 (77%) 13106.m02528 protein pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT3G26560.1 +1 0.0 1391 711/956 (74%) ATP-dependent RNA helicase, putative | chr3:9750122-9753719 REVERSE LENGTH=1168