- Predicted Gene MLOC_66388
MLOC_66388 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 4.28732 | 6.43241 | 5.81858 | 5.37447 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.10089 | 4.50165 | 5.57911 | 3.7698 |
INF1 | Young developing inflorescences (5mm) | 11.0208 | 11.2679 | 10.0702 | 8.81003 |
INF2 | Developing inflorescences (1-1.5 cm) | 9.86188 | 10.1636 | 10.5305 | 10.6059 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.64314 | 5.21885 | 4.83441 | 5.4233 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.08483 | 2.18673 | 3.0147 | 7.24136 |
CAR5 | Developing grain, bracts removed (5 DPA) | 9.24865 | 9.56355 | 9.90924 | 8.75724 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.7489 | 2.77527 | 2.61505 | 6.088 |
CDS Structure of MLOC_66388
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_66388.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g05260.1 |
+2 |
0.0 |
1389 |
714/757 (94%) |
13105.m00544 protein helicase, putative, expressed |
TAIR PP10 |
AT1G03190.2 |
+2 |
0.0 |
1127 |
573/761 (75%) |
| Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase protein | chr1:775822-779863 FORWARD LENGTH=758 |