MLOC_66388 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.287326.432415.818585.37447
LEAShoots from the seedlings (10 cm shoot stage)4.100894.501655.579113.7698
INF1Young developing inflorescences (5mm)11.020811.267910.07028.81003
INF2Developing inflorescences (1-1.5 cm)9.8618810.163610.530510.6059
ROORoots from the seedlings (10 cm shoot stage)3.643145.218854.834415.4233
NODDeveloping tillers at six leaf stage, 3rd internode2.084832.186733.01477.24136
CAR5Developing grain, bracts removed (5 DPA)9.248659.563559.909248.75724
CAR15Developing grain, bracts removed (15 DPA)2.74892.775272.615056.088



CDS Structure of MLOC_66388






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66388.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355543NoneNoneNoneNone
MLOC_66388.3CUST_5328_PI427708080AvailableAvailablecontig_51489 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05260.1 +2 0.0 1389 714/757 (94%) 13105.m00544 protein helicase, putative, expressed
TAIR PP10 AT1G03190.2 +2 0.0 1127 573/761 (75%) | Symbols: ATXPD, UVH6 | RAD3-like DNA-binding helicase protein | chr1:775822-779863 FORWARD LENGTH=758