MLOC_66373 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1154720.3250680.2591130.280211
LEAShoots from the seedlings (10 cm shoot stage)0.1532240.2635020.5232140.260708
INF1Young developing inflorescences (5mm)0.1574060.08952150.2999050.169992
INF2Developing inflorescences (1-1.5 cm)0.7756970.6002830.1434810.634913
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.1011920.1456640.115780.398109
CAR5Developing grain, bracts removed (5 DPA)0.3292240.5351440.6590170.536578
CAR15Developing grain, bracts removed (15 DPA)0.2855680.2045860.1572190.586324



CDS Structure of MLOC_66373






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66373.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_66373.1CUST_8929_PI427708083AvailableAvailablecontig_51475 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g64650.2 +3 3e-17 78 43/64 (67%) 13101.m06962 protein VAMP-like protein YKT62, putative, expressed
TAIR PP10 AT5G58060.1 +3 4e-11 62 29/54 (54%) | Symbols: YKT61, ATYKT61, ATGP1 | SNARE-like superfamily protein | chr5:23498277-23500128 FORWARD LENGTH=199