MLOC_66335 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.829916.779736.978177.58777
LEAShoots from the seedlings (10 cm shoot stage)3.660912.406383.094132.41518
INF1Young developing inflorescences (5mm)15.755314.453315.239514.0861
INF2Developing inflorescences (1-1.5 cm)11.522111.659910.859613.8512
ROORoots from the seedlings (10 cm shoot stage)9.962156.20867.523317.6088
NODDeveloping tillers at six leaf stage, 3rd internode1.186372.961052.845867.76535
CAR5Developing grain, bracts removed (5 DPA)4.645874.532573.964734.87258
CAR15Developing grain, bracts removed (15 DPA)0.5479460.5732190.5928961.57029



CDS Structure of MLOC_66335






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66335.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362775NoneNoneNoneNone
MLOC_66335.1CUST_5319_PI427708080AvailableAvailablecontig_51393 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g04490.1 +1 4e-66 216 147/226 (65%) 13103.m00459 protein cyclin-dependent kinase inhibitor, putative, expressed
TAIR PP10 AT5G48820.1 +1 9e-22 95 81/226 (36%) | Symbols: KRP3, ICK6 | inhibitor/interactor with cyclin-dependent kinase | chr5:19792608-19794346 REVERSE LENGTH=222