MLOC_66305 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains88.893768.075276.07678.6905
LEAShoots from the seedlings (10 cm shoot stage)37.269230.716360.695435.8354
INF1Young developing inflorescences (5mm)48.259351.619149.185544.7717
INF2Developing inflorescences (1-1.5 cm)33.355739.491238.041443.6725
ROORoots from the seedlings (10 cm shoot stage)53.232941.589744.37352.0952
NODDeveloping tillers at six leaf stage, 3rd internode21.289518.654728.28559.6766
CAR5Developing grain, bracts removed (5 DPA)59.250561.949869.468968.1535
CAR15Developing grain, bracts removed (15 DPA)8.828668.085748.7499421.5631



CDS Structure of MLOC_66305






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66305.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248610.1NoneNoneNoneNone
MLOC_66305.3CUST_5317_PI427708080AvailableAvailablecontig_51365 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g02640.1 -2 0.0 582 276/304 (91%) 13108.m00204 protein succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed
TAIR PP10 AT5G40650.1 -2 3e-107 322 150/178 (84%) | Symbols: SDH2-2 | succinate dehydrogenase 2-2 | chr5:16281462-16283296 FORWARD LENGTH=280