MLOC_66290 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.83245.330926.49847.85078
LEAShoots from the seedlings (10 cm shoot stage)54.235576.79896.097577.4032
INF1Young developing inflorescences (5mm)4.426123.499213.777653.99322
INF2Developing inflorescences (1-1.5 cm)3.515153.480733.563914.88573
ROORoots from the seedlings (10 cm shoot stage)0.214871.494491.796572.12076
NODDeveloping tillers at six leaf stage, 3rd internode14.058817.732633.890680.4905
CAR5Developing grain, bracts removed (5 DPA)10.286511.264611.062314.3586
CAR15Developing grain, bracts removed (15 DPA)0.7021320.7490540.623412.04602



CDS Structure of MLOC_66290






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66290.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354260NoneNoneNoneNone
MLOC_66290.1CUST_5315_PI427708080AvailableAvailablecontig_51352 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g38820.1 +3 6e-103 310 176/227 (78%) 13102.m04277 protein expressed protein
TAIR PP10 AT1G67700.1 +3 3e-65 211 104/162 (64%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:25374295-25375716 FORWARD LENGTH=230