MLOC_66289 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains70.335477.825583.379267.1511
LEAShoots from the seedlings (10 cm shoot stage)47.192637.243835.858930.2583
INF1Young developing inflorescences (5mm)88.265282.275983.937563.2588
INF2Developing inflorescences (1-1.5 cm)51.432153.088855.077351.0663
ROORoots from the seedlings (10 cm shoot stage)42.072956.610778.183555.98
NODDeveloping tillers at six leaf stage, 3rd internode31.764920.769115.615253.8093
CAR5Developing grain, bracts removed (5 DPA)56.765660.374460.562449.6727
CAR15Developing grain, bracts removed (15 DPA)13.052311.515412.776825.3297



CDS Structure of MLOC_66289






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66289.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250002.1NoneNoneNoneNone
MLOC_66289.2CUST_5314_PI427708080AvailableAvailablecontig_51352 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g38810.1 +2 0.0 671 352/379 (93%) 13102.m04276 protein 26S proteasome non-ATPase regulatory subunit 6, putative, expressed
TAIR PP10 AT4G24820.2 +2 0.0 601 295/364 (81%) 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain | chr4:12790471-12792599 REVERSE LENGTH=387