MLOC_66260 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.887112.433513.467414.2283
LEAShoots from the seedlings (10 cm shoot stage)16.83059.9002114.428112.1787
INF1Young developing inflorescences (5mm)1.156471.363581.65181.31305
INF2Developing inflorescences (1-1.5 cm)7.618488.773249.0106610.2152
ROORoots from the seedlings (10 cm shoot stage)2.259243.675516.620625.08506
NODDeveloping tillers at six leaf stage, 3rd internode0.02822090.03795680.04566710.134603
CAR5Developing grain, bracts removed (5 DPA)313.948312.048315.26341.382
CAR15Developing grain, bracts removed (15 DPA)37.621140.451739.5722103.583



CDS Structure of MLOC_66260






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66260.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250112.1NoneNoneNoneNone
MLOC_66260.1CUST_5312_PI427708080AvailableAvailablecontig_51306 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g42610.1 -2 4e-86 264 147/208 (71%) 13112.m04479 protein YABBY domain containing protein, putative, expressed
TAIR PP10 AT2G26580.2 -2 4e-51 171 99/183 (54%) | Symbols: YAB5 | plant-specific transcription factor YABBY family protein | chr2:11303923-11306739 REVERSE LENGTH=164