MLOC_66217 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.974927.390625.415421.3735
LEAShoots from the seedlings (10 cm shoot stage)18.08389.3750311.050910.4097
INF1Young developing inflorescences (5mm)21.948723.012321.818316.828
INF2Developing inflorescences (1-1.5 cm)19.622323.617119.181620.9073
ROORoots from the seedlings (10 cm shoot stage)12.312220.786813.971319.8003
NODDeveloping tillers at six leaf stage, 3rd internode22.609120.770413.100959.0209
CAR5Developing grain, bracts removed (5 DPA)21.957321.95820.292518.4891
CAR15Developing grain, bracts removed (15 DPA)5.195684.997984.9966310.3419



CDS Structure of MLOC_66217






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66217.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363728NoneNoneNoneNone
MLOC_66217.2CUST_18333_PI427708080AvailableAvailablecontig_51216 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g42370.1 +2 0.0 2047 1055/1200 (88%) 13104.m04178 protein expressed protein
TAIR PP10 AT5G11040.1 +2 0.0 1452 757/1209 (63%) | Symbols: TRS120, AtTRS120 | TRS120 | chr5:3495332-3500610 FORWARD LENGTH=1186