MLOC_66199 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6441612.091941.437991.55022
LEAShoots from the seedlings (10 cm shoot stage)1.880021.695231.840481.30687
INF1Young developing inflorescences (5mm)3.984374.406215.104163.91678
INF2Developing inflorescences (1-1.5 cm)7.36645.577315.323626.9353
ROORoots from the seedlings (10 cm shoot stage)1.158542.478071.701142.18662
NODDeveloping tillers at six leaf stage, 3rd internode1.944323.666632.342756.72832
CAR5Developing grain, bracts removed (5 DPA)3.418792.799892.785112.96888
CAR15Developing grain, bracts removed (15 DPA)0.4611660.4908920.7266721.4097



CDS Structure of MLOC_66199






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66199.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_66199.1CUST_8916_PI427708083AvailableAvailablecontig_51218 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g04960.5 +1 2e-20 94 41/53 (77%) 13103.m00520 protein cysteinyl-tRNA synthetase, putative, expressed
TAIR PP10 AT2G31170.1 +1 5e-15 78 33/55 (60%) | Symbols: SYCO ARATH | Cysteinyl-tRNA synthetase, class Ia family protein | chr2:13282559-13285616 REVERSE LENGTH=563