MLOC_66194 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains000.07853090.0181207
LEAShoots from the seedlings (10 cm shoot stage)0.05339210.4436081.246160.286815
INF1Young developing inflorescences (5mm)0.06532280.07336560.08869220.0621703
INF2Developing inflorescences (1-1.5 cm)0.2444080.07806580.1267660.161012
ROORoots from the seedlings (10 cm shoot stage)00.03577770.2766690.0479757
NODDeveloping tillers at six leaf stage, 3rd internode0.4800990.5013821.752372.13346
CAR5Developing grain, bracts removed (5 DPA)00.09978070.105870.0637966
CAR15Developing grain, bracts removed (15 DPA)0.1337880.1746090.1054220.287222



CDS Structure of MLOC_66194






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66194.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370217NoneNoneNoneNone
MLOC_66194.1CUST_18332_PI427708080AvailableAvailablecontig_51216 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g44410.1 +1 2e-88 282 151/187 (81%) 13108.m04822 protein harpin-induced protein 1 domain containing protein, expressed
TAIR PP10 AT3G44380.1 +1 7e-48 169 92/185 (50%) Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr3:16036254-16036814 REVERSE LENGTH=186