MLOC_66192 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1600450.4593480.311240.364998
LEAShoots from the seedlings (10 cm shoot stage)0.9309712.012561.48341.23486
INF1Young developing inflorescences (5mm)0.880040.7882350.7945930.728275
INF2Developing inflorescences (1-1.5 cm)1.222021.614191.436351.63787
ROORoots from the seedlings (10 cm shoot stage)00.2275890.1303930.334028
NODDeveloping tillers at six leaf stage, 3rd internode0.2763050.7814090.6178572.20034
CAR5Developing grain, bracts removed (5 DPA)1.247651.098421.404951.24927
CAR15Developing grain, bracts removed (15 DPA)0.6573350.624230.7749281.65309



CDS Structure of MLOC_66192






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66192.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_66192.1CUST_8915_PI427708083AvailableAvailablecontig_51216 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52950.1 +1 1e-170 363 184/351 (52%) 13103.m05776 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT1G43760.1 +3 2e-14 71 59/192 (31%) DNAse I-like superfamily protein | chr1:16528880-16531065 REVERSE LENGTH=626