MLOC_66128 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.150666.523785.994045.87257
LEAShoots from the seedlings (10 cm shoot stage)5.809865.098995.032044.56316
INF1Young developing inflorescences (5mm)18.072716.46818.806714.2501
INF2Developing inflorescences (1-1.5 cm)15.965216.020117.547615.8952
ROORoots from the seedlings (10 cm shoot stage)7.679648.226027.722989.30527
NODDeveloping tillers at six leaf stage, 3rd internode4.341784.322188.1313914.6749
CAR5Developing grain, bracts removed (5 DPA)9.326358.994289.900928.78064
CAR15Developing grain, bracts removed (15 DPA)2.26362.292082.142084.94805



CDS Structure of MLOC_66128






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66128.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375561NoneNoneNoneNone
MLOC_66128.1CUST_5294_PI427708080AvailableAvailablecontig_51131 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g45920.1 -1 0.0 674 413/490 (84%) 13102.m05151 protein expressed protein
TAIR PP10 AT1G73240.1 -1 7e-86 291 168/391 (43%) CONTAINS InterPro DOMAIN/s: Nucleoporin protein Ndc1-Nup (InterPro:IPR019049); Has 36 Blast hits to 36 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:27542397-27544668 REVERSE LENGTH=519