MLOC_66120 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains43.088850.458747.238149.515
LEAShoots from the seedlings (10 cm shoot stage)30.53246.235098.8301513.2379
INF1Young developing inflorescences (5mm)28.624424.1821.993221.4319
INF2Developing inflorescences (1-1.5 cm)18.961623.155420.419523.405
ROORoots from the seedlings (10 cm shoot stage)13.353722.876417.470725.4776
NODDeveloping tillers at six leaf stage, 3rd internode15.500310.85779.5245834.3202
CAR5Developing grain, bracts removed (5 DPA)15.731818.448814.767816.2834
CAR15Developing grain, bracts removed (15 DPA)2.502052.214342.371035.76679



CDS Structure of MLOC_66120






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66120.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362138NoneNoneNoneNone
MLOC_66120.2CUST_5292_PI427708080AvailableAvailablecontig_51128 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g30980.1 +3 0.0 704 397/466 (85%) 13105.m03179 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT4G03110.1 +3 1e-164 482 258/409 (63%) | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-defense related 1 | chr4:1376612-1379275 REVERSE LENGTH=441