MLOC_66088 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.515113.172054.103332.82768
LEAShoots from the seedlings (10 cm shoot stage)13.205123.006617.007510.5192
INF1Young developing inflorescences (5mm)11.4769.7918112.0556.79908
INF2Developing inflorescences (1-1.5 cm)7.6934311.128312.82738.017
ROORoots from the seedlings (10 cm shoot stage)1.940152.445911.083921.81459
NODDeveloping tillers at six leaf stage, 3rd internode0.9022751.220437.967375.50236
CAR5Developing grain, bracts removed (5 DPA)3.49456.466716.579163.58242
CAR15Developing grain, bracts removed (15 DPA)2.464112.458922.62344.0694



CDS Structure of MLOC_66088






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66088.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_66088.7NoneAvailableAvailablecontig_51088 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g05520.1 -3 9e-116 365 178/210 (85%) 13106.m00537 protein OsMKK1 - putative MAPKK based on amino acid sequence homology, expressed
TAIR PP10 AT5G56580.1 -3 3e-85 282 137/219 (63%) | Symbols: ATMKK6, ANQ1, MKK6 | MAP kinase kinase 6 | chr5:22904851-22906620 REVERSE LENGTH=356