MLOC_66029 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.11303200.06044560.0706988
LEAShoots from the seedlings (10 cm shoot stage)5.1810514.506213.4138.8427
INF1Young developing inflorescences (5mm)0.03456710.06255080.04438710.045034
INF2Developing inflorescences (1-1.5 cm)0.09311260.03632280.1120760.0927074
ROORoots from the seedlings (10 cm shoot stage)0.5413080.4356260.305180.486983
NODDeveloping tillers at six leaf stage, 3rd internode0.1980930.6639922.964823.14268
CAR5Developing grain, bracts removed (5 DPA)0.6775660.4264680.6194510.590205
CAR15Developing grain, bracts removed (15 DPA)0.8583650.7320680.6142651.95499



CDS Structure of MLOC_66029






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_66029.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357687NoneNoneNoneNone
MLOC_66029.1CUST_5274_PI427708080AvailableAvailablecontig_51023 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g01134.1 +2 0.0 672 337/456 (74%) 13110.m00014 protein OsSCP46 - Putative Serine Carboxypeptidase homologue, expressed
TAIR PP10 AT1G73300.1 +2 8e-129 391 195/435 (45%) | Symbols: scpl2 | serine carboxypeptidase-like 2 | chr1:27559673-27562048 REVERSE LENGTH=441