MLOC_65966 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)00.027738500.0305113
INF2Developing inflorescences (1-1.5 cm)0.1638720.2419890.4982870.335598
ROORoots from the seedlings (10 cm shoot stage)0.0610452000.0297961
NODDeveloping tillers at six leaf stage, 3rd internode0.02155340.0043931600.023379
CAR5Developing grain, bracts removed (5 DPA)82.828183.338984.543390.8403
CAR15Developing grain, bracts removed (15 DPA)11.440914.287813.654734.3194



CDS Structure of MLOC_65966






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65966.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375718NoneNoneNoneNone
MLOC_65966.1CUST_5259_PI427708080AvailableAvailablecontig_50953 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g07430.2 -3 2e-120 359 201/247 (81%) 13102.m12319 protein OsMADS29 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT5G23260.2 -3 5e-39 144 100/251 (40%) | Symbols: TT16, ABS, AGL32 | K-box region and MADS-box transcription factor family protein | chr5:7836442-7838340 FORWARD LENGTH=252