MLOC_65953 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.04775140.043819700.0573068
LEAShoots from the seedlings (10 cm shoot stage)0.1961930.2000830.855590.361537
INF1Young developing inflorescences (5mm)0.0316048000.0282023
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.1461110.05423220.269210.113689
NODDeveloping tillers at six leaf stage, 3rd internode0.03951430.008208080.01096540.0203147
CAR5Developing grain, bracts removed (5 DPA)0.1098860.1260140.1408420.142791
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_65953






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65953.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361666NoneNoneNoneNone
MLOC_65953.1CUST_5256_PI427708080AvailableAvailablecontig_50935 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g37410.1 +3 2e-97 314 280/544 (51%) 13106.m03870 protein helix-loop-helix DNA-binding domain containing protein
TAIR PP10 AT5G56960.1 +3 1e-17 87 55/155 (35%) basic helix-loop-helix (bHLH) DNA-binding family protein | chr5:23038703-23041174 REVERSE LENGTH=466