MLOC_65935 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.93120.505419.345118.0701
LEAShoots from the seedlings (10 cm shoot stage)34.342535.949930.457529.4299
INF1Young developing inflorescences (5mm)31.970934.824940.26228.4449
INF2Developing inflorescences (1-1.5 cm)61.942657.582261.424562.8491
ROORoots from the seedlings (10 cm shoot stage)9.8053117.714117.005120.0122
NODDeveloping tillers at six leaf stage, 3rd internode18.205224.962627.779692.6282
CAR5Developing grain, bracts removed (5 DPA)41.48539.173638.577236.5547
CAR15Developing grain, bracts removed (15 DPA)12.195910.617611.897124.8348



CDS Structure of MLOC_65935






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65935.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374875NoneNoneNoneNone
MLOC_65935.3CUST_5250_PI427708080AvailableAvailablecontig_50900 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g41960.1 -1 0.0 647 319/473 (67%) 13110.m03933 protein eukaryotic translation initiation factor 3 subunit B, putative, expressed
TAIR PP10 AT5G27640.1 -1 0.0 572 299/565 (53%) | Symbols: TIF3B1, EIF3B, ATEIF3B-1, EIF3B-1, ATTIF3B1 | translation initiation factor 3B1 | chr5:9781207-9784759 REVERSE LENGTH=712