MLOC_65909 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.223187.431285.048397.2481
LEAShoots from the seedlings (10 cm shoot stage)4.5862.45913.441693.12335
INF1Young developing inflorescences (5mm)15.427614.942113.79913.7847
INF2Developing inflorescences (1-1.5 cm)14.132812.871512.285915.7172
ROORoots from the seedlings (10 cm shoot stage)4.808065.371196.466827.04679
NODDeveloping tillers at six leaf stage, 3rd internode0.2701350.1436060.1638440.527979
CAR5Developing grain, bracts removed (5 DPA)8.089398.365727.544538.64374
CAR15Developing grain, bracts removed (15 DPA)3.351432.823412.755167.67075



CDS Structure of MLOC_65909






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65909.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363061NoneNoneNoneNone
MLOC_65909.1CUST_5243_PI427708080AvailableAvailablecontig_50861 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g36450.1 +3 0.0 653 338/385 (88%) 13111.m03571 protein OsFBO15 - F-box and other domain containing protein, expressed
TAIR PP10 AT5G06550.1 +3 1e-179 521 262/380 (69%) CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | chr5:2001246-2003068 REVERSE LENGTH=502