- Predicted Gene MLOC_65909
MLOC_65909 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 7.22318 | 7.43128 | 5.04839 | 7.2481 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 4.586 | 2.4591 | 3.44169 | 3.12335 |
| INF1 | Young developing inflorescences (5mm) | 15.4276 | 14.9421 | 13.799 | 13.7847 |
| INF2 | Developing inflorescences (1-1.5 cm) | 14.1328 | 12.8715 | 12.2859 | 15.7172 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 4.80806 | 5.37119 | 6.46682 | 7.04679 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.270135 | 0.143606 | 0.163844 | 0.527979 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 8.08939 | 8.36572 | 7.54453 | 8.64374 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 3.35143 | 2.82341 | 2.75516 | 7.67075 |
CDS Structure of MLOC_65909
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_65909.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os11g36450.1 |
+3 |
0.0 |
653 |
338/385 (88%) |
13111.m03571 protein OsFBO15 - F-box and other domain containing protein, expressed |
| TAIR PP10 |
AT5G06550.1 |
+3 |
1e-179 |
521 |
262/380 (69%) |
CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | chr5:2001246-2003068 REVERSE LENGTH=502 |