MLOC_65860 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.414421.176021.490921.60114
LEAShoots from the seedlings (10 cm shoot stage)446.985848.45917.352636.028
INF1Young developing inflorescences (5mm)0.06978050.1233470.1801760.135562
INF2Developing inflorescences (1-1.5 cm)00.1062470.17460.191801
ROORoots from the seedlings (10 cm shoot stage)7.681166.597095.854758.3104
NODDeveloping tillers at six leaf stage, 3rd internode8.039367.4972751.778850.6697
CAR5Developing grain, bracts removed (5 DPA)9.9241317.274415.16216.7756
CAR15Developing grain, bracts removed (15 DPA)9.7012810.46458.3815226.6873



CDS Structure of MLOC_65860






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65860.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371825NoneNoneNoneNone
MLOC_65860.1CUST_18328_PI427708080AvailableAvailablecontig_50783 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g19740.1 +3 1e-41 144 82/129 (64%) 13101.m02146 protein calvin cycle protein CP12, putative, expressed
TAIR PP10 AT3G62410.1 +3 4e-31 116 56/73 (77%) | Symbols: CP12-2, CP12 | CP12 domain-containing protein 2 | chr3:23091006-23091401 FORWARD LENGTH=131