MLOC_65843 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.0387117000.0286509
LEAShoots from the seedlings (10 cm shoot stage)00.062909200.0534328
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.0268284000.0331882
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.0248249000.00213342
CAR5Developing grain, bracts removed (5 DPA)44.193251.425348.694654.108
CAR15Developing grain, bracts removed (15 DPA)4.72897.65666.9154416.6831



CDS Structure of MLOC_65843






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65843.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65843.1CUST_14891_PI427708080AvailableAvailablecontig_50751 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g66290.2 -1 6e-92 284 162/222 (73%) 13101.m07178 protein OsMADS21 - MADS-box family gene with MIKCc type-box, expressed
TAIR PP10 AT4G09960.1 -1 3e-77 244 128/207 (62%) | Symbols: STK, AGL11 | K-box region and MADS-box transcription factor family protein | chr4:6236713-6239409 REVERSE LENGTH=230