MLOC_65829 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.420815.107213.945115.0327
LEAShoots from the seedlings (10 cm shoot stage)32.998924.844429.84824.2456
INF1Young developing inflorescences (5mm)39.60333.382231.092231.8772
INF2Developing inflorescences (1-1.5 cm)41.598644.380346.847452.6767
ROORoots from the seedlings (10 cm shoot stage)6.1739911.059912.45612.7632
NODDeveloping tillers at six leaf stage, 3rd internode3.920984.160683.7398511.0441
CAR5Developing grain, bracts removed (5 DPA)40.704538.690135.940741.1491
CAR15Developing grain, bracts removed (15 DPA)5.43943.547994.6864711.7216



CDS Structure of MLOC_65829






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65829.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361971NoneNoneNoneNone
MLOC_65829.2CUST_5234_PI427708080AvailableAvailablecontig_50724 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g53540.3 -1 0.0 1102 643/808 (80%) 13104.m11959 protein homeobox and START domains containing protein, putative, expressed
TAIR PP10 AT1G05230.4 -1 0.0 934 496/698 (71%) | Symbols: HDG2 | homeodomain GLABROUS 2 | chr1:1513388-1517024 REVERSE LENGTH=721