MLOC_65828 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.010148.774668.820997.83126
LEAShoots from the seedlings (10 cm shoot stage)8.349888.385437.577556.34694
INF1Young developing inflorescences (5mm)10.029311.973413.02698.82824
INF2Developing inflorescences (1-1.5 cm)12.771812.9712.137812.8348
ROORoots from the seedlings (10 cm shoot stage)8.5614711.586110.647111.7237
NODDeveloping tillers at six leaf stage, 3rd internode12.887413.490914.367341.4567
CAR5Developing grain, bracts removed (5 DPA)13.252113.015814.059711.8708
CAR15Developing grain, bracts removed (15 DPA)4.09853.81124.245178.4023



CDS Structure of MLOC_65828






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65828.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357760NoneNoneNoneNone
MLOC_65828.2CUST_5233_PI427708080AvailableAvailablecontig_50724 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g53530.1 +3 0.0 925 522/572 (91%) 13104.m05512 protein expressed protein
TAIR PP10 AT3G15160.1 +3 0.0 625 341/538 (63%) unknown protein; Has 266 Blast hits to 264 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr3:5104582-5108279 FORWARD LENGTH=562