MLOC_65793 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains112.89584.461192.487194.1317
LEAShoots from the seedlings (10 cm shoot stage)0.6496933.786532.963242.06159
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.101154000.125239
ROORoots from the seedlings (10 cm shoot stage)0.2913370.6375451.143220.834932
NODDeveloping tillers at six leaf stage, 3rd internode1.47020.1176982.37561.71825
CAR5Developing grain, bracts removed (5 DPA)132.701169.83280.3352141.751
CAR15Developing grain, bracts removed (15 DPA)000.1487820.275077



CDS Structure of MLOC_65793






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65793.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65793.1CUST_8874_PI427708083AvailableAvailablecontig_50670 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g43600.1 -2 1e-41 140 70/87 (80%) 13112.m04596 protein RNA recognition motif containing protein, expressed
TAIR PP10 AT2G21660.2 -2 1e-38 131 62/87 (71%) | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159