MLOC_65752 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains47.542642.901233.512833.8109
LEAShoots from the seedlings (10 cm shoot stage)14.04722.085635.736645.01849
INF1Young developing inflorescences (5mm)63.255661.009137.47842.9542
INF2Developing inflorescences (1-1.5 cm)52.069470.588137.612956.0749
ROORoots from the seedlings (10 cm shoot stage)20.788828.498320.633220.4147
NODDeveloping tillers at six leaf stage, 3rd internode0.1885090.12935200.213472
CAR5Developing grain, bracts removed (5 DPA)33.602641.958636.695932.458
CAR15Developing grain, bracts removed (15 DPA)1.33410.6353771.655772.67871



CDS Structure of MLOC_65752






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65752.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65752.1CUST_14884_PI427708080AvailableAvailablecontig_50625 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g67110.1 +3 2e-58 191 146/169 (86%) 13101.m07276 protein expressed protein
TAIR PP10 AT5G36710.1 +3 2e-28 110 78/143 (55%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:14425491-14426042 REVERSE LENGTH=183