- Predicted Gene MLOC_65752
MLOC_65752 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 47.5426 | 42.9012 | 33.5128 | 33.8109 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 14.0472 | 2.08563 | 5.73664 | 5.01849 |
INF1 | Young developing inflorescences (5mm) | 63.2556 | 61.0091 | 37.478 | 42.9542 |
INF2 | Developing inflorescences (1-1.5 cm) | 52.0694 | 70.5881 | 37.6129 | 56.0749 |
ROO | Roots from the seedlings (10 cm shoot stage) | 20.7888 | 28.4983 | 20.6332 | 20.4147 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.188509 | 0.129352 | 0 | 0.213472 |
CAR5 | Developing grain, bracts removed (5 DPA) | 33.6026 | 41.9586 | 36.6959 | 32.458 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.3341 | 0.635377 | 1.65577 | 2.67871 |
CDS Structure of MLOC_65752
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_65752.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g67110.1 |
+3 |
2e-58 |
191 |
146/169 (86%) |
13101.m07276 protein expressed protein |
TAIR PP10 |
AT5G36710.1 |
+3 |
2e-28 |
110 |
78/143 (55%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:14425491-14426042 REVERSE LENGTH=183 |