MLOC_65728 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.760618.252517.616920.233
LEAShoots from the seedlings (10 cm shoot stage)14.77535.7618710.43058.07448
INF1Young developing inflorescences (5mm)86.93592.860986.192381.5105
INF2Developing inflorescences (1-1.5 cm)80.2235101.33697.4261112.774
ROORoots from the seedlings (10 cm shoot stage)23.048720.141321.820723.3791
NODDeveloping tillers at six leaf stage, 3rd internode5.3974812.05162.8400423.3554
CAR5Developing grain, bracts removed (5 DPA)26.954731.802122.959829.962
CAR15Developing grain, bracts removed (15 DPA)6.08254.369146.0127914.0545



CDS Structure of MLOC_65728






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65728.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376430NoneNoneNoneNone
MLOC_65728.2CUST_395_PI427708083AvailableAvailablecontig_50585 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g51200.1 -1 4e-46 155 79/118 (67%) 13103.m05566 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT4G27230.2 -1 2e-46 154 80/117 (68%) | Symbols: HTA2 | histone H2A 2 | chr4:13637515-13638325 REVERSE LENGTH=131