MLOC_65718 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4116670.3660770.6511870.500296
LEAShoots from the seedlings (10 cm shoot stage)0.1527760.167530.2609860.185553
INF1Young developing inflorescences (5mm)1.132250.9819851.178941.01397
INF2Developing inflorescences (1-1.5 cm)0.7445140.5910920.7805160.836759
ROORoots from the seedlings (10 cm shoot stage)0.4028270.4070580.2060490.528633
NODDeveloping tillers at six leaf stage, 3rd internode0.1107560.1183740.1499110.449065
CAR5Developing grain, bracts removed (5 DPA)0.6579870.6593240.62410.717418
CAR15Developing grain, bracts removed (15 DPA)0.04011490.08899230.02925650.156917



CDS Structure of MLOC_65718






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65718.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369760NoneNoneNoneNone
MLOC_65718.3CUST_5216_PI427708080AvailableAvailablecontig_50572 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62220.1 +1 0.0 702 341/437 (78%) 13101.m06657 protein pentatricopeptide, putative
TAIR PP10 AT5G42450.1 +1 5e-157 465 229/442 (52%) Pentatricopeptide repeat (PPR) superfamily protein | chr5:16977297-16978850 FORWARD LENGTH=517