MLOC_65717 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.702113.500512.267115.3714
LEAShoots from the seedlings (10 cm shoot stage)5.811677.4895110.3387.03009
INF1Young developing inflorescences (5mm)15.393417.726516.782215.0358
INF2Developing inflorescences (1-1.5 cm)12.56814.666711.03115.3706
ROORoots from the seedlings (10 cm shoot stage)14.314514.17613.497118.2984
NODDeveloping tillers at six leaf stage, 3rd internode1.516452.286645.678419.66621
CAR5Developing grain, bracts removed (5 DPA)12.708317.220514.67916.0439
CAR15Developing grain, bracts removed (15 DPA)4.142873.632434.0591710.0931



CDS Structure of MLOC_65717






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65717.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251020.1NoneNoneNoneNone
MLOC_65717.1CUST_5215_PI427708080AvailableAvailablecontig_50572 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62210.1 +3 4e-102 301 149/161 (93%) 13101.m06655 protein 50S ribosomal protein L17, putative, expressed
TAIR PP10 AT5G09770.1 +3 3e-85 258 126/159 (79%) Ribosomal protein L17 family protein | chr5:3035267-3036518 REVERSE LENGTH=160