MLOC_65712 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.682261.931741.561151.81271
LEAShoots from the seedlings (10 cm shoot stage)1.779841.440761.880971.47819
INF1Young developing inflorescences (5mm)3.440493.255314.201412.89541
INF2Developing inflorescences (1-1.5 cm)3.468443.428893.695533.74953
ROORoots from the seedlings (10 cm shoot stage)0.843171.647271.159261.8197
NODDeveloping tillers at six leaf stage, 3rd internode1.25741.512211.937355.20799
CAR5Developing grain, bracts removed (5 DPA)1.941141.482081.927011.66877
CAR15Developing grain, bracts removed (15 DPA)0.6488130.3582930.6249321.20656



CDS Structure of MLOC_65712






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65712.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356668NoneNoneNoneNone
MLOC_65712.2CUST_18325_PI427708080AvailableAvailablecontig_50542 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g19100.3 +1 2e-53 194 133/441 (30%) 13111.m01933 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT3G43590.1 +1 5e-13 73 77/310 (25%) zinc knuckle (CCHC-type) family protein | chr3:15509753-15512255 FORWARD LENGTH=551