- Predicted Gene MLOC_65712
MLOC_65712 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 1.68226 | 1.93174 | 1.56115 | 1.81271 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.77984 | 1.44076 | 1.88097 | 1.47819 |
INF1 | Young developing inflorescences (5mm) | 3.44049 | 3.25531 | 4.20141 | 2.89541 |
INF2 | Developing inflorescences (1-1.5 cm) | 3.46844 | 3.42889 | 3.69553 | 3.74953 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.84317 | 1.64727 | 1.15926 | 1.8197 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.2574 | 1.51221 | 1.93735 | 5.20799 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.94114 | 1.48208 | 1.92701 | 1.66877 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.648813 | 0.358293 | 0.624932 | 1.20656 |
CDS Structure of MLOC_65712
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_65712.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os11g19100.3 |
+1 |
2e-53 |
194 |
133/441 (30%) |
13111.m01933 protein retrotransposon protein, putative, unclassified |
TAIR PP10 |
AT3G43590.1 |
+1 |
5e-13 |
73 |
77/310 (25%) |
zinc knuckle (CCHC-type) family protein | chr3:15509753-15512255 FORWARD LENGTH=551 |