MLOC_65553 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.701474.573394.148124.31796
LEAShoots from the seedlings (10 cm shoot stage)7.122023.57853.825053.94888
INF1Young developing inflorescences (5mm)5.984776.257316.369864.34608
INF2Developing inflorescences (1-1.5 cm)4.369125.590514.754674.75005
ROORoots from the seedlings (10 cm shoot stage)4.184274.918844.077695.05194
NODDeveloping tillers at six leaf stage, 3rd internode4.758055.030366.5704415.9109
CAR5Developing grain, bracts removed (5 DPA)3.709744.341754.038933.37898
CAR15Developing grain, bracts removed (15 DPA)1.19340.9370341.485632.20716



CDS Structure of MLOC_65553






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65553.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65553.1CUST_14848_PI427708080AvailableAvailablecontig_503454 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g06370.2 -3 3e-141 422 212/316 (67%) 13103.m00698 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT2G48000.1 -3 2e-17 86 71/328 (22%) Pentatricopeptide repeat (PPR) superfamily protein | chr2:19639270-19640803 REVERSE LENGTH=481