MLOC_65546 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.336423.887863.213153.41515
LEAShoots from the seedlings (10 cm shoot stage)16.821418.939326.651116.1693
INF1Young developing inflorescences (5mm)3.36793.995854.097633.13732
INF2Developing inflorescences (1-1.5 cm)7.081784.471115.050065.86255
ROORoots from the seedlings (10 cm shoot stage)1.071690.8727360.3293580.913842
NODDeveloping tillers at six leaf stage, 3rd internode12.887920.800825.59156.8096
CAR5Developing grain, bracts removed (5 DPA)5.802986.834777.34847.4659
CAR15Developing grain, bracts removed (15 DPA)1.542161.246011.347055.61878



CDS Structure of MLOC_65546






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65546.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65546.2CUST_14847_PI427708080AvailableAvailablecontig_50318 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g35810.1 +3 1e-93 296 170/232 (73%) 13110.m03231 protein thylakoid lumenal protein, putative, expressed
TAIR PP10 AT5G53490.2 +3 4e-83 268 130/157 (83%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:21723488-21724621 REVERSE LENGTH=235