MLOC_65487 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9454130.6252960.4816710.738358
LEAShoots from the seedlings (10 cm shoot stage)0.280663000.259845
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)000.4927170.347813
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)12.360315.08212.615915.813
CAR15Developing grain, bracts removed (15 DPA)176.873162.452209.474509.701



CDS Structure of MLOC_65487






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65487.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65487.1CUST_8838_PI427708083AvailableAvailablecontig_50260 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g10310.3 -1 3e-50 163 88/127 (69%) 13105.m01107 protein acid phosphatase, putative, expressed
TAIR PP10 AT4G29270.1 -1 2e-24 97 39/85 (46%) HAD superfamily, subfamily IIIB acid phosphatase | chr4:14423797-14424848 REVERSE LENGTH=256