MLOC_65486 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7640840.687510.8860020.727237
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)000.1896090.0661777
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)4.935248.014315.914846.12715
CAR15Developing grain, bracts removed (15 DPA)72.669985.71188.9973190.802



CDS Structure of MLOC_65486






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65486.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_65486.1NoneAvailableAvailablecontig_50260 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g27580.1 -3 6e-63 199 99/130 (76%) 13107.m02755 protein HAD superfamily phosphatase, putative
TAIR PP10 AT4G29260.1 -3 8e-30 115 58/127 (46%) HAD superfamily, subfamily IIIB acid phosphatase | chr4:14422310-14423409 REVERSE LENGTH=255