MLOC_65396 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.96586.792418.555468.5035
LEAShoots from the seedlings (10 cm shoot stage)2.962183.712292.371152.42829
INF1Young developing inflorescences (5mm)4.724636.819898.462345.25721
INF2Developing inflorescences (1-1.5 cm)12.91686.5800210.716510.4584
ROORoots from the seedlings (10 cm shoot stage)6.984194.548287.294375.94408
NODDeveloping tillers at six leaf stage, 3rd internode3.662312.544495.067858.78827
CAR5Developing grain, bracts removed (5 DPA)7.579217.19238.439117.33135
CAR15Developing grain, bracts removed (15 DPA)1.964012.08221.928034.61817



CDS Structure of MLOC_65396






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65396.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369198NoneNoneNoneNone
MLOC_65396.1CUST_5172_PI427708080AvailableAvailablecontig_50124 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g41620.1 +2 3e-43 152 82/128 (64%) 13105.m04421 protein expressed protein
TAIR PP10 AT5G04000.1 +2 3e-22 93 47/81 (58%) unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1079305-1079732 REVERSE LENGTH=116