- Predicted Gene MLOC_65396
MLOC_65396 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_65396_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_65396_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 11.9658 | 6.79241 | 8.55546 | 8.5035 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.96218 | 3.71229 | 2.37115 | 2.42829 |
INF1 | Young developing inflorescences (5mm) | 4.72463 | 6.81989 | 8.46234 | 5.25721 |
INF2 | Developing inflorescences (1-1.5 cm) | 12.9168 | 6.58002 | 10.7165 | 10.4584 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.98419 | 4.54828 | 7.29437 | 5.94408 |
NOD | Developing tillers at six leaf stage, 3rd internode | 3.66231 | 2.54449 | 5.06785 | 8.78827 |
CAR5 | Developing grain, bracts removed (5 DPA) | 7.57921 | 7.1923 | 8.43911 | 7.33135 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.96401 | 2.0822 | 1.92803 | 4.61817 |
CDS Structure of MLOC_65396
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_65396.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g41620.1 |
+2 |
3e-43 |
152 |
82/128 (64%) |
13105.m04421 protein expressed protein |
TAIR PP10 |
AT5G04000.1 |
+2 |
3e-22 |
93 |
47/81 (58%) |
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:1079305-1079732 REVERSE LENGTH=116 |