MLOC_65390 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2210080.09055320.02888040.104862
LEAShoots from the seedlings (10 cm shoot stage)0.068152700.1227580.0792169
INF1Young developing inflorescences (5mm)0.0166904000.0149589
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)5.993375.676744.179715.85739
NODDeveloping tillers at six leaf stage, 3rd internode0.1361280.07267690.2250050.286749
CAR5Developing grain, bracts removed (5 DPA)0.02267050.02165990.02081490.0225596
CAR15Developing grain, bracts removed (15 DPA)0.01451770.01717710.02059060.0462642



CDS Structure of MLOC_65390






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_65390.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366161NoneNoneNoneNone
MLOC_65390.1CUST_18319_PI427708080AvailableAvailablecontig_50116 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g20980.1 +3 0.0 889 452/519 (87%) 13101.m02230 protein pectinesterase, putative, expressed
TAIR PP10 AT4G02330.1 +3 0.0 588 299/548 (55%) | Symbols: ATPMEPCRB | Plant invertase/pectin methylesterase inhibitor superfamily | chr4:1032479-1034928 FORWARD LENGTH=573